Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads
As metagenomic studies move to increasing numbers of samples, communities like the human gut may benefit more from the assembly of abundant microbes in many samples, rather than the exhaustive assembly of fewer samples.
The Evolution of Bits and Bottlenecks in a Scientific Workflow Trying to Keep up With Technology: Accelerating 4D Image Segmentation Applied to NASA data
Proceedings of the 15th IEEE International eScience Conference (2019).
Workflow-Driven Distributed Machine Learning in CHASE-CI: A Cognitive Hardware and Software Ecosystem Community Infrastructure
Proceedings of the IEEE International Symposium on Parallel and Distributed Processing Symposium Workshops (IPDPSW) (2019).
Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn’s Disease
mSystems 4:e00337-18. (2019).
Microbiome 101: Studying, Analyzing, and Interpreting Gut Microbiome Data for Clinicians
Clinical Gastroenterology and Hepatology 17, 218-230. (2019).